| Encyclia kennedyi (Fowlie & Withner) Hágsater, 1973 |
| Encyclia kienastii (Rchb. f.) Dressler & G.E. Pollard, 1971 |
| Encyclia lancifolia (Pav. ex Lindl.) Dressler & G.E. Pollard, 1971 |
| Encyclia laxa Schltr., 1918 |
| Encyclia limbata (Lindl.) Dressler, 1961 |
| Encyclia linearis (Ruiz & Pav.) Dressler, 1961 |
| Encyclia linkiana (Klotzsch) Schltr., 1918 |
| Encyclia livida (Lindl.) Dressler, 1961 |
| Encyclia lorata Dressler & G.E. Pollard, 1974 |
| Encyclia luteorosea (A. Rich. & Galeotti) Dressler, 1971 |
| Encyclia macrochila (Hook.) Neumann, 1846 |
| Encyclia maculosa (Ames, F.T. Hubb. & C. Schweinf.) Hoehne, 1952 |
| Encyclia magnispatha (Ames, F.T. Hubb. & C. Schweinf.) Dressler, 1961 |
| Encyclia mariae (Ames) Hoehne, 1952 |
| Encyclia meliosma (Rchb. f.) Schltr., 1918 |
| Encyclia michuacana (Lex.) Schltr., 1918 |
| Encyclia microbulbon (Hook.) Schltr., 1918 |
| Encyclia nematocaulon (A. Rich.) Acuña, 1939 |
| Encyclia nemoralis (Lindl.) Schltr., 1914 |
| Encyclia neurosa (Ames) Dressler & G.E. Pollard, 1971 |