| Peromyscus maniculatus subsp. geronimensis J. A. Allen, 1898 |
| Peromyscus maniculatus subsp. hueyi E. W. Nelson & Goldman, 1932 |
| Peromyscus maniculatus subsp. labecula Elliot, 1903 |
| Peromyscus maniculatus subsp. magdalenae Osgood, 1909 |
| Peromyscus maniculatus subsp. margaritae Osgood, 1909 |
| Peromyscus maniculatus subsp. martinensis E. W. Nelson & Goldman, 1931 |
| Peromyscus maniculatus subsp. rufinus (Merriam, 1890) |
| Peromyscus maniculatus subsp. sonoriensis (LeConte, 1853) |
| Peromyscus martirensis (J. A. Allen, 1893) |
| Peromyscus megalops Merriam, 1898 |
| Peromyscus megalops subsp. auritus Merriam, 1898 |
| Peromyscus megalops subsp. azulensis Goodwin, 1956 |
| Peromyscus megalops subsp. megalops Merriam, 1898 |
| Peromyscus megalops subsp. melanurus Osgood, 1909 |
| Peromyscus mekisturus Merriam, 1898 |
| Peromyscus melanocarpus Osgood, 1904 |
| Peromyscus melanophrys (Coues, 1874) |
| Peromyscus melanophrys subsp. coahuilensis R. H. Baker, 1952 |
| Peromyscus melanophrys subsp. consobrinus Osgood, 1904 |
| Peromyscus melanophrys subsp. melanophrys (Coues, 1874) |