| Peromyscus eremicus subsp. fraterculus (G. S. Miller, 1892) |
| Peromyscus eremicus subsp. insulicola Osgood, 1909 |
| Peromyscus eremicus subsp. interparietalis Burt, 1932 |
| Peromyscus eremicus subsp. lorenzi Banks, 1967 |
| Peromyscus eremicus subsp. papagensis Goldman, 1917 |
| Peromyscus eremicus subsp. phaeurus Osgood, 1904 |
| Peromyscus eremicus subsp. polypolius Osgood, 1909 |
| Peromyscus eremicus subsp. propinquus J. A. Allen, 1898 |
| Peromyscus eremicus subsp. ryckmani Banks, 1967 |
| Peromyscus eremicus subsp. sinaloensis S. Anderson, 1972 |
| Peromyscus eremicus subsp. stephensi Mearns, 1897 |
| Peromyscus eremicus subsp. tiburonensis Mearns, 1897 |
| Peromyscus eva Thomas, 1898 |
| Peromyscus eva subsp. carmeni Townsend, 1912 |
| Peromyscus eva subsp. eva Thomas, 1898 |
| Peromyscus evides Osgood, 1904 |
| Peromyscus felipensis Merriam, 1898 |
| Peromyscus fraterculus (G. S. Miller, 1892) |
| Peromyscus fraterculus subsp. pseudocrinitus Burt, 1932 |
| Peromyscus furvus J. A. Allen & Chapman, 1897 |