| Puccinia difformis Kunze, 1817 |
| Puccinia dioicae Magnus, 1877 |
| Puccinia diplanchnis Arthur, 1904 |
| Puccinia discreta H. S. Jacks. & Holw., 1918 |
| Puccinia distorta Holw., 1905 |
| Puccinia diutina Mains & Holw., 1918 |
| Puccinia dochmia Berk. & M.A. Curtis, 1860 |
| Puccinia dolosa Arthur & Fromme, 1915 |
| Puccinia durangensis Cummins, 1917 |
| Puccinia duthiei Ellis & Tracy, 1897 |
| Puccinia echinopteridis Holw., 1904 |
| Puccinia egregia Arthur, 1905 |
| Puccinia electrae Dietel & Howl., 1901 |
| Puccinia elytrariae Henn., 1895 |
| Puccinia enceliae Dietel & Holw., 1897 |
| Puccinia erratica H. S. Jacks. & Holw., 1918 |
| Puccinia esclavensis Dietel & Holw., 1897 |
| Puccinia espinosarum Dietel & Holw., 1901 |
| Puccinia euphorbiae Henn., 1893 |
| Puccinia euphorbiae var. euphorbiae Henn., 1893 |