| Puccinia duthiei Ellis & Tracy, 1897 |
| Puccinia echinopteridis Holw., 1904 |
| Puccinia egregia Arthur, 1905 |
| Puccinia electrae Dietel & Howl., 1901 |
| Puccinia elytrariae Henn., 1895 |
| Puccinia enceliae Dietel & Holw., 1897 |
| Puccinia erratica H. S. Jacks. & Holw., 1918 |
| Puccinia esclavensis Dietel & Holw., 1897 |
| Puccinia espinosarum Dietel & Holw., 1901 |
| Puccinia euphorbiae Henn., 1893 |
| Puccinia euphorbiae var. euphorbiae Henn., 1893 |
| Puccinia euphorbiae var. longipes Syd., 1901 |
| Puccinia exasperans Howl., 1905 |
| Puccinia exilis P. Syd. & Syd., 1903 |
| Puccinia exitiosa Syd. & Holw., 1904 |
| Puccinia farinacea Long, 1902 |
| Puccinia farinacea var. azurea J. W. Baxter, 1952 |
| Puccinia farinacea var. constricta J. W. Baxter, 1952 |
| Puccinia farinacea var. farinacea Long, 1902 |
| Puccinia ferox Dietel & Holw., 1901 |