| Aphaenogaster huachucana Creighton, 1934 |
| Aphaenogaster huachucana subsp. crinimera Cole, 1953 |
| Aphaenogaster juliana Pergande, 1894 |
| Aphaenogaster manni (Pergande, 1896) |
| Aphaenogaster megommata Smith, 1963 |
| Aphaenogaster mexicana (Pergande, 1896) |
| Aphaenogaster montana MacKay, 2017 |
| Aphaenogaster mutica Pergande, 1896 |
| Aphaenogaster patruelis Forel, 1886 |
| Aphaenogaster patruelis subsp. bakeri (Wheeler, 1904) |
| Aphaenogaster patruelis subsp. carbonaria Pergande, 1894 |
| Aphaenogaster patruelis subsp. willowsi Wheeler, 1933 |
| Aphaenogaster pergandei Mayr, 1886 |
| Aphaenogaster phalangium Emery, 1890 |
| Aphaenogaster punctaticeps Mackay, 1989 |
| Aphaenogaster punctatissima MacKay, 2017 |
| Aphaenogaster reticulaticeps MacKay, 2017 |
| Aphaenogaster rudis Enzmann, 1947 |
| Aphaenogaster silvestrii Menozzi, 1929 |
| Aphaenogaster sonorae Pergande, 1893 |