| Endocalyx Berk. & Broome, 1876 |
| Endocalyx melanoxanthus (Berk. & Broome) Petch, 1908 |
| Endocalyx melanoxanthus var. melanoxanthus (Berk. & Broome) Petch, 1908 |
| Endococcus Nyl., 1855 |
| Endococcus incrassatus Etayo & Breuss, 2001 |
| Endococcus oreinae Hafellner, 2002 |
| Endophragmia Duvernoy & Maire, 1920 |
| Endophragmia dimorphospora Awao & Udagawa, 1974 |
| Endophragmia hyalosperma (Corda) Morgan-Jones & A.L.J. Cole, 1964 |
| Endophragmia parva M. B. Ellis, 1976 |
| Ernakulamia Subram., 1996 |
| Ernakulamia cochinensis (Subram.) Subram., 1996 |
| Etheirophora Kohlm. & Volkm.-Kohlm., 1989 |
| Etheirophora blepharospora (Kohlm. & E. Kohlm.) Kohlm. & Volkm.-Kohlm., 1989 |
| Eversia J. L. Crane & Schokn., 1977 |
| Eversia parvula Hol.-Jech., 1987 |
| Exochalara W. Gams & Hol.-Jech., 1976 |
| Exochalara guadalcanalensis (Matsush.) W. Gams & Hol.-Jech., 1976 |
| Exosporium Link, 1809 |
| Exosporium ampullaceum (Petch) M. B. Ellis, 1961 |