| Indigofera coronilloides M. Martens & Galeotti, 1843 |
| Indigofera cuernavacana Rose, 1897 |
| Indigofera densiflora M. Martens & Galeotti, 1843 |
| Indigofera discolor Rydb., 1923 |
| Indigofera divaricata Jacq., 1798 |
| Indigofera domingensis Spreng. ex DC., 1825 |
| Indigofera edwardi Govaerts, 2018 |
| Indigofera excelsa M. Martens & Galeotti, 1843 |
| Indigofera ferruginea Schumach. & Thonn., 1827 |
| Indigofera floresii Cruz Durán & M. Sousa, 2017 |
| Indigofera fruticosa Rose, 1897 |
| Indigofera fusca G. Don, 1832 |
| Indigofera grisea Desv., 1826 |
| Indigofera guatemalensis Moc., Sessé & Cerv. ex Backer, 1908 |
| Indigofera hartwegii Rydb., 1923 |
| Indigofera hirsuta L., 1753 |
| Indigofera hirsutissima M. Sousa & Cruz Durán, 2017 |
| Indigofera hirta Bojer, 1837 |
| Indigofera humboldtiana Spreng., 1826 |
| Indigofera incompta McVaugh, 1987 |